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New step towards the treatment of myotubular myopathy: gene therapy restores strength and prolongs lives in affected dogs

A team of researchers in France, led by Dr. Ana Buj-Bello (Genethon/Inserm) and teams at the University of Washington and Harvard Medical School in the United States, achieved a new step towards the treatment of myotubular myopathy by gene therapy. The researchers demonstrated the efficacy of administration of a therapeutic vector by a single intravenous injection and identified the dose that restores long-term muscular strength in a large animal model of the disease.

This work, published today in Molecular Therapy, has been achieved thanks to donations from the French Telethon and the support of the Myotubular Trust.
Myotubular myopathy is an X-linked genetic disease affecting 1 in 50,000 newborn boys. It is caused by mutations in the MTM1 gene encoding myotubularin, a protein involved in the functioning of muscle cells. The severe form of the disease leads to hypotonia, generalized muscle weakness and death in early infancy due to breathing difficulties. Dogs naturally affected by this myopathy also have a reduced life expectancy. To date, there is no effective treatment for this rare disease.

In the present study, Genethon’s team developed and manufactured an adeno-associated virus (AAV) vector able to deliver a normal copy of the MTM1 gene in the entire musculature. The AAV product was administrated by a simple intravenous injection in ten week-old dogs manifesting the first symptoms of the disease – instead of the locoregional route of administration used in previous studies (Science Translational Medicine, January 2014).

The treatment restored whole-body muscle strength and function, and prolonged the life of affected dogs. Treated dogs were indistinguishable from normal animals 9 months after product injection.

Dr. Ana Buj-Bello, Genethon/Inserm said: « We report a dose-finding study and show the therapeutic benefit of the vector by a single intravenous injection. It is a clinically-relevant route of administration and represents a step towards a clinical trial in patients”.

Discovery of an HIV reservoir marker: A new avenue toward eliminating the virus

L1bis

© Fabrice Hyber, pour Organoïde/Institut Pasteur

French researchers have identified a marker that makes it possible to differentiate “dormant” HIV-infected cells from healthy cells. This discovery will make it possible to isolate and analyze reservoir cells which, by silently hosting the virus, are responsible for its persistence even among patients receiving antiviral treatment, whose viral load is undetectable. It offers new therapeutic strategies for targeting infected cells. This research is part of the ANRS strategic program “Réservoirs du VIH”. It is the result of a collaboration between the CNRS, Montpellier University, Inserm, the Institut Pasteur, the Henri-Mondor AP-HP hospital in Créteil, the Gui de Chauliac hospital (CHU de Montpellier) and the VRI (Vaccine Research Institute), and is published in the journal Nature on March 15, 2017. A patent owned by the CNRS has been filed for the diagnostic and therapeutic use of the identified marker.

Since 1996, there has been consensus among the scientific community that a cure for HIV will involve targeting “reservoir cells” that host the virus in the organisms of patients undergoing triple therapy. HIV can remain hidden in these reservoirs, in latent form, for several decades, eluding the immune system’s response and antiviral treatments, without any viral protein being expressed. But if treatment ceases, the virus massively proliferates and the disease progresses again. Patients must therefore receive treatment for life. To envisage eliminating this dormant virus, a first stage consists in distinguishing the HIV-infected reservoir cells from their healthy counterpart cells, which resemble them to a very large degree. This is what has been achieved by a team of researchers, who have identified a marker of reservoir cells: a protein present only on the surface of infected cells.

Hypothesizing that HIV might leave a mark on the surface of its host cell, researchers from the Institut de génétique humaine (CNRS/Montpellier University) first worked in vitro on an infection model developed in their laboratory. After comparing infected cells and healthy cells,[1] they noticed one particular protein, coded by a gene among the hundred of those expressed in a specific way by infected cells. Present only on the surface of the infected cells, the CD32a protein thus met, in vitro, the criteria of a reservoir cell marker. This was then confirmed by experiments on clinical samples. By studying blood samples from 12 patients living with HIV and receiving treatment,[2] the researchers isolated the cells expressing the marker and observed that almost all were HIV carriers. In vitro, the activation of these cells induced a production of viruses capable of reinfecting healthy cells whereas their elimination entailed a significant delay in viral production.

In the fight against HIV, this discovery paves the way to a better fundamental understanding of viral reservoirs, which it will now be possible to isolate more easily and analyze directly. In the longer term, it should lead to therapeutic strategies aiming to eliminate the latent virus from the organism and make remission—at least temporary—possible in the absence of antiviral treatments.

This research received support from the ANRS, MSD Avenir, the European Commission, the Fondation Bettencourt Schuelle, the Fondation pour la recherche médicale and the Vaccine Research Institute (VRI).

[1] The cells studied are T CD4 lymphocytes, whose numbers are progressively reduced upon infection by HIV. The number of these cells is thus used by doctors to monitor the progression of the disease and the efficacy of treatments.

[2] Patients monitored by the Clinical Immunology and Infectious Disease Department at the Henri-Mondor AP-HP hospital in Créteil and by the Infectious and Tropical Disease Department at Gui de Chauliac hospital (CHU de Montpellier).

Breast cancer: identification of a molecular switch that controls cancer stem cells

Cancer sein Fournier

© fotolia

Some cancer cells are resistant to treatment and persist. If they are capable of proliferating again, even a very small number of these cells may be enough to reconstitute a tumour after or despite treatment. Various approaches to eliminate these “cancer stem cells” (CSCs) have been tried in recent years: targeted therapies, vaccination and tumour starvation. In an article published in the journal Cell Reports, Christophe Ginestier, Inserm Research Fellow at the Cancer Research Center of Marseille (CRCM, Aix-Marseille University/CNRS/Institut Paoli-Calmettes), and his collaborators identify a specific RNA[1] molecule that plays the role of a molecular switch that can “turn off” or “turn on” CSC proliferation in breast cancers.

Scientific data accumulated in the course of recent years have shown that tumours contain a particular population of cells with different properties. Indeed, a small number of the cells constituting a tumour have the ability, when isolated and then injected into animal models, to form a tumour identical to the original one. These cells, known as cancer stem cells (CSCs), can proliferate (and thereby renew themselves), differentiate (and thereby give rise to the different populations that make up the tumour), or even become temporarily dormant, which allows them to escape most treatments, since these mainly target dividing cells.

If the tumour is to be eliminated in such a way that it cannot grow again, the CSCs must be neutralised. The development of any new therapeutic strategy requires a better understanding of the intrinsic molecular mechanisms of CSCs. MicroRNAs have been described as regulators that can direct the “cellular destiny” of stem cells, particularly during embryogenesis. They might play a major role in CSC biology. MicroRNAs are small RNA molecules that, unlike messenger RNAs, do not act as intermediates in protein production based on information encoded by genes, but regulate the activity of other RNAs or of proteins.

Christophe Ginestier, Emmanuelle Charafe-Jauffret and their co-authors screened the full complement of microRNAs present in the genome in order to identify microRNAs capable of directing the choice for a CSC between self-renewal and differentiation. They thus observed that inactivation of one particular microRNA, known as miR-600, causes an increase in CSCs, while its overexpression reduces tumourigenicity.

They then showed that miR-600 works by acting on an enzyme needed to activate a protein (WNT) known to activate a signalling cascade involved in embryogenesis. When they inactivate miR-600, the researchers observe the expansion of CSCs. Conversely, when miR-600 production is increased, differentiation of CSCs is promoted at the expense of their proliferation: tumour progression is stopped.

This mechanism, demonstrated experimentally, clearly seems to play a role in the development of breast cancers, since the researchers were also able to show, by analysing a panel of 120 human breast tumours, that a low level of miR-600 is found to be associated with a strong activation of the WNT protein and a poor prognosis for patients whose tumours show these characteristics.

“If miR-600 is a switch for tumour aggressiveness, it may therefore constitute an excellent therapeutic target,” conclude the researchers. “Our data also tend to prove that resistance to treatment and relapse after treatment could be due to the fact that the therapies employed are not targeting the right cancer cells.”

[1] RNA: ribonucleic acid, a biological molecule present in nearly every living being. Often providing intermediate support to genes during protein synthesis, RNA can also be involved in many chemical reactions within the cell.

Sickle cell disease : remission of disease symptoms in the world’s first patient treated using gene therapy

A team led by Prof. Marina Cavazzana, working at Necker Hospital for Sick Children, AP-HP, and the Imagine Institute (AP-HP/Inserm/Paris Descartes University) performed gene therapy on a 13-year-old patient with severe sickle cell anaemia in October 2014 as part of a phase I/II clinical trial. Conducted in collaboration with Prof. Philippe Leboulch (CEA/Faculties of Medicine at Paris-Sud and Harvard Universities), who developed the vector used, and supervised the preclinical studies, this innovative treatment provided complete remission from the clinical signs of the disease, and the correction of biological signs. Results (15-month follow up after transplantation) are published in the New England Journal of Medicine on 2 March 2017, and confirm the efficacy of this new therapy of the future. 

Sickle cell disease, a serious form of chronic anaemia of genetic origin, is characterised by the production of abnormal haemoglobin and deformed (falciform or sickle-shaped) red blood cells, due to a mutation in the gene encoding β-globin. This disease is associated with very serious episodes of pain caused by vaso-occlusive crises. It also causes lesions in all the vital organs, great sensitivity to infection, iron overload and endocrine disorders. Haemoglobinopathies affect an estimated 7% of the world’s population. Among them, sickle cell disease is considered the most common, with 50 million people carrying the mutation, i.e. who are at risk of transmitting the disease or actually have it. Abnormalities in the β-globin gene, i.e. sickle cell disease and β-thalassaemia, are the most widely distributed inherited diseases in the world, more common than all other genetic diseases combined.

The clinical trial, coordinated by Prof. Marina Cavazzana*, was conducted at Necker Hospital for Sick Children, AP-HP, and the Imagine Institute.

The first phase involved taking haematopoietic stem cells, the source of all blood cell lineages, from the patient’s bone marrow. A viral vector[1] carrying a therapeutic gene, previously developed to treat ß-thalassaemia, was then introduced into these cells in order to correct them. This lentiviral vector, capable of carrying long complex segments of DNA, was developed by Prof. Philippe Leboulch**, and is produced on a large scale by the American company bluebird bio[2].

The treated cells were then reinjected intravenously into the young patient in October 2014. During his subsequent period in hospital, the adolescent then received care in the Paediatric Immunohaematology Unit at Necker Hospital for Sick Children, in collaboration with Prof. Stéphane Blanche and Dr Jean-Antoine Ribeil.

Fifteen months after transplantation with the corrected cells, the patient no longer requires blood transfusions, no longer suffers from vaso-occlusive crises, and has fully resumed his physical and academic activities. “We also note that the therapeutic protein from the vector, which strongly inhibits pathological sickling, is remarkably highly expressed and effective,” explains Prof. Philippe Leboulch.

“With this gene therapy approach, we hope to develop future clinical trials and enrol a high number of patients with sickle cell disease, in Île de France and throughout the national territory,” says Prof. Marina Cavazzana.

[1] A vector is a self-replicating molecule of DNA or RNA (plasmid, cosmid, viral DNA) into which foreign DNA is inserted, and which is then used to enable this DNA to enter a target cell.

[2] A company founded by Prof. Philippe Leboulch, and sponsor of the clinical trial.

Rituximab effective in the treatment of membranous glomerulonephritis

A national trial on membranous glomerulonephritis in 80 patients was coordinated by Prof. Pierre Ronco, of the Department of Nephrology and Dialysis at Tenon Hospital AP-HP, of the Inserm Unit “Rare and common kidney diseases, matrix remodelling and tissue repair” [1] and Pierre and Marie Curie University, and by Dr Karine Dahan, of the Nephrology Day Hospital at Tenon Hospital AP-HP. This serious autoimmune disease is the most common cause of nephrotic syndrome in adults. In 30% of cases, it progresses to very severe renal failure. Conducted in collaboration with Prof. Tabassome Simon, from the Department of Clinical Pharmacology and East Paris Clinical Research Centre at Saint Antoine Hospital, AP-HP, this trial shows, for the first time, the efficacy and safety of rituximab in treating the disease.

This work was published on 27 June 2016 in the Journal of the American Society of Nephrology.

 

Membranous glomerulonephritis is a rare autoimmune disease (one new case recorded per year per 100,000 inhabitants), in most cases caused by antibodies directed against a protein (PLA2R) located in the renal filter (the glomerulus). The immunosuppressive treatments – aimed at attenuating this immune reaction of the body – that have been used until now have shown some efficacy, associated, however, with considerable toxicity: risks of infection, fertility problems, subsequent development of cancer or impaired renal function.

Rituximab is a monoclonal antibody specifically directed against the B lymphocytes that produce the toxic antibodies. Until now, its safety and efficacy had not been demonstrated.

In this context, Prof. Pierre Ronco and Dr Karine Dahan conducted a study in 80 patients with a severe form of membranous glomerulonephritis at Tenon Hospital AP-HP. The patients were enrolled from January 2012 to July 2014 in 31 nephrology departments throughout France, including 9 departments of Paris public hospitals (AP-HP) [2], with annual follow-up for two years.

This randomised study made it possible to compare the efficacy of the standard treatment, known as “antiproteinuric,” with the same treatment combined with 2 intravenous infusions of rituximab (375 mg/m2) given at a one-week interval. Patients were observed for the occurrence of immunological remission (disappearance of antibodies), clinical remission (reduction or disappearance of proteinuria) and adverse effects of the treatment.

Results showed that rituximab had a positive effect on immunological remission (50% from 3 months) and clinical remission (with 64% of patients entering remission before the end of the study), with corresponding values of only 12% and 34% respectively in patients given the antiproteinuric treatment alone.

The percentage of remission was similar to that obtained with other immunosuppressive treatments, but with a much lower therapeutic risk, since the number of adverse events was the same in both treatment groups (with or without rituximab).

 

“This study contributes a very important element to the debate surrounding immunosuppressive treatments in membranous glomerulonephritis,” explains Prof. Pierre Ronco.

“In clinical terms, it favours the use of rituximab as a first-line treatment in severe forms, with very regular monitoring of the level of anti-PLA2R antibodies in these patients.”

This study will provide a basis for other protocols aimed at increasing the percentage of clinical and immunological remission without increasing the rate of adverse effects. It is likely that some patients did not respond to the treatment because the rituximab leaked into the urine. These protocols will therefore include the use of higher or more frequent doses, and further IV infusions in patients who maintain high antibody levels.

Ethical issues surrounding CRISPR-Cas9 technology

On 13 June last, the Inserm Ethics Committee assembled over a hundred individuals at its annual seminar. All those present had the benefit of an ethical perspective on many problems posed by biomedical research. One of the questions addressed was that of CRISPR-Cas9 technology. The Ethics Committee has devoted a specific opinion to it, while the NIH has just obtained a first green light for a human cancer immunotherapy trial.

 

The Inserm Ethics Committee (CEI) may receive referrals or carry out investigations on its own initiative to reflect on ethical questions raised by medical science- and health-related research carried out within the Institute. At the end of its reflection, it issues an opinion in the form of notes that may evolve as new contributions are added. In 2015, the CEO of Inserm requested the Ethics Committee to specifically examine questions related to the development of CRISPR technology, and particularly:

1- What are the questions raised by the technology as such?

2- Does the rapidity of its development raise particular problems?

3- Does the simplicity of its use call for regulation of its implementation in the laboratory?

 

Given the technical advantages of the method, and its very rapid dissemination, the question now is to evaluate where, when and how its use might pose an ethical problem. It seemed immediately important to distinguish three areas associated with different issues:

1/ application of the technology to humans, which essentially raises the question of germ line modifications;

2/ application to animals, particularly “pest” species, which raises the question of potential horizontal gene transfer and the emergence of irreversible damage to biodiversity;

3/ risks of damage to the environment.

 

Recommendations of the Inserm Ethics Committee

The Committee immediately proposes that Inserm adopt the following principles:

1- To encourage research aimed at evaluating the efficacy and safety of CRISPR technology and other recently published genome editing technologies, in experimental models that can allow case-by-case determination of the benefit/risk balance of a therapeutic application, including any applications that involve germ cells and the embryo. This information is essential to the future determination of what might be authorised for human use in terms of therapeutic approaches.

2- The potentially adverse effects of gene drive systems must be evaluated before any use outside of a laboratory, observing the containment rules already in force for other genetic modifications. Evaluations must be made over long periods, given the transmissible nature of the driver gene. Reversibility measurements should be provided for in the event of escape or adverse effects. Such analyses and the design of multiple scenarios require the constitution of pluridisciplinary teams.

3- To comply with the prohibition of any modification of the germ line nuclear genome for reproductive purposes in the human species, and not support any application to modify the legal conditions until uncertainties about the risks have been clearly evaluated, and until a broad consultation involving multiple partners from civil society has ruled on this scenario.

4- To participate in any national or international initiative dealing with questions of freedom of research and medical ethics, including initiatives with emerging countries that will also be affected by the development of genome editing technologies.

5- Finally, to draw attention to the more philosophical question which contrasts the plasticity of life with the idea of a human nature founded on the only biological constant. Awareness needs to be increased regarding the utopia and dystopias that can be generated by some therapeutic promises.

 

The origin of heart dysfunctions in myotonic dystrophy identified

An international team, including researchers in France at Inserm, CNRS and the University of Strasbourg, brought together at IGBMC[1] is lifting the veil on the molecular mechanisms causing heart dysfunctions in myotonic dystrophy, a genetic disease affecting one person in 8,000. This new study, published this week in Nature Communications, could contribute to discovering a treatment.

DM muscle cells

(c) Inserm/IGBMC

Myotonic dystrophy, also known as Steinert disease, is the commonest adult form of muscular dystrophy. Patients affected by this genetic condition suffer from wasting of skeletal muscles as well as arrhythmia and other cardiac dysfunctions. This is a particularly debilitating disease, for which there is currently no treatment.

Myotonic dystrophy is due to a mutation leading to the expression of RNA containing long repetitive sequences of the CUG trinucleotide. These mutated RNAs accumulate and alter regulation of alternative splicing[2] of numerous genes. Despite the significance of work already done on this disease, many points remain to be elucidated. This is true for the origin of arrhythmia and other cardiac dysfunctions, which represent the second most common cause of death in this disease.

In this new study, researchers have identified new splicing alterations in messenger RNA from heart samples of affected patients. Among these many alterations, biologists have established that those relating to the cardiac sodium channel (SCN5A) were fundamental to understanding the cardiac dysfunctions of these patients.

Scientists there clarified the molecular mechanisms leading to the alteration of SCN5A in these patients. Collaboration with Denis Furling’s team at the Institut de Myologie in Paris has enabled these cardiac alterations to be reproduced in a mouse model.

“The next step would be to see if, by restoring correct splicing of SCN5A, we can also successfully restore normal heart function”, explains Nicolas Charlet-Berguerand, Inserm Research Director, who coordinated this work. The researchers are hoping that this breakthrough will give a fresh boost to research into this rare disease.

Modèle d'épissage alternatif du canal sodique cardiaque

Alternative splicing model of the cardiac sodium channel (SCN5A) in myotonic dystrophy. (c) Inserm/IGBMC

This work was financed by the French Myopathy Association (AFM), the European research council (ERC), the European E-rare programme (ANR), Inserm and Labex-INRT (ANR).

[1] Institute of Genetics and Molecular and Cellular Biology (Inserm/CNRS/University of Strasbourg)

[2] In eukaryotes, this is a process by which RNA transcribed from a gene can undergo different cutting and splicing steps leading to the loss of various regions. This process enables proteins having distinct properties to be produced from the same gene.

A new type of sarcoma identified

Inserm teams led by Prof. Jean-Yves Blay and Christophe Caux in Lyon[1], and by Franck Tirode and Olivier Delattre in Paris[2] have just demonstrated a new genetic variant in tumours that had not been identified until now. Their results enable better diagnosis of these tumours using a validated biomarker. This study is published in the journal Nature Genetics.

The application of so-called “high-throughput” sequencing techniques to oncology is currently transforming our understanding of the genesis and natural progression of cancers. These new data have partly called into question the tumour classifications based on traditional techniques such as pathology. According to Prof. Jean-Yves Blay, codirector of this study, “Our priority is to refine tumour classifications used in clinical practice in order to offer patients the most appropriate therapeutic option. This is particularly important where sarcomas are concerned, where we are regularly faced with the problem of highly undifferentiated tumours that are difficult to classify.”

A single objective, two strategies

The study, published in Nature Genetics, is aimed at characterising malignant tumours that are suspected of belonging to the sarcoma group but have remained unclassifiable until now. Molecular investigations have shown alterations in the SMARCA4 gene, which encodes one of the subunits of BAF complexes. These complexes are involved in regulating the structure of chromatin, a compacted form of DNA in the cell nucleus.

To obtain these results, two complementary and independent approaches were employed (see appended schema on page 4). The first, based on pathological analyses, was used by the researchers from the Cancer Research Center of Lyon (Inserm/CNRS/Lyon 1 University/Léon Bérard Centre), and focused on unclassified sarcomas based on their microscopic features.

In parallel, the researchers from Institut Curie undertook a process of “blind” characterisation, analysing expression profiles by carrying out high-throughput RNA sequencing on approximately thirty undifferentiated sarcomas. Franck Tirode, an Inserm Research Fellow and codirector of the study, thus identified in this cohort a subgroup of tumours with very similar expression profiles, suggesting a common nature.

The Paris and Lyon researchers then pooled their results, having observed that they were interested in the same type of pathology. They validated these promising preliminary results by finding other similar cases or observations within one year, thanks to the collaboration of many hospital facilities distributed throughout France.

A new tumour entity

This collaborative study ultimately made it possible to identify 19 tumour samples with inactivation of the SMARCA4 gene. These tumours showed similar clinical and pathological features, producing large tumour masses that compressed the airways and progressed very rapidly, usually in young male smokers. Furthermore, when viewed under the microscope, they were all very similar to rhabdoid tumours, a form of paediatric cancer with a very poor prognosis. Moreover, these same tumours, described nearly 17 years ago by Olivier Delattre’s team at Institut Curie are, remarkably, associated with mutations of the SMARCB1 gene, which encodes a subunit of the BAF complex, of which SMARCA4 is a component.

The researchers compared expression profiles of all their tumours with numerous other types of tumours, and confirmed not only the exceptional homogeneity of these tumours among themselves, but especially the relationship of their signature to rhabdoid tumours. “However, although the oncogenic event might be comparable, the genomic complexity of the tumours we have studied differs considerably from the simple genomics of rhabdoid tumours,” says Franck Tirode.

Based on these results, the scientists could thus confirm that their cohort corresponded to a new homogeneous entity, which they have named “SMARCA4-deficient thoracic sarcoma.”

Better diagnosis for faster management

The researchers emphasise that these tumours are highly aggressive and resistant to current treatment methods. The BAF complex shows alterations in nearly 20% of human cancers, and is the subject of intensive research as a potential therapeutic target. Although this publication does not provide an offer of treatment to affected patients in the immediate future, it does show that these tumours are easily recognisable in clinical practice. Indeed, it was possible to identify new “prospective” cases during the study, enabling speedier management of the patients.

It was for this purpose that the authors of the study validated the SOX2 biomarker, which is particularly overexpressed by this new tumour entity, thus facilitating clinical diagnosis. They emphasise that the aggressiveness of these tumours is probably not unconnected with the overexpression of SOX2, which can endow cells with stem cell properties.

In conclusion, this work is part of the present concept of oncology and “personalised therapy,” in which the establishment of an accurate diagnosis is an essential prerequisite for the success of precision medicine.

Sarcomas

Sarcomas are rare tumours that represent fewer than 1% of all new cancer cases, i.e. approximately 3,500 new cases a year. They affect people of all ages, although they are more frequently seen in children and young adults. They are found in bones, cartilage, adipose tissues, muscles, blood vessels or other connective or supporting tissue. Diagnosis of these rare tumours is coordinated at national level by the Groupe Sarcome Français (French Sarcoma Group) network, comprising 3 regional referral centres, including the Bergonié Institute (Bordeaux), Léon Bérard Centre (Lyon) and the Gustave Roussy Institute (Villejuif).

[1] Cancer Research Center of Lyon, Inserm U1052/CNRS 5286, Claude Bernard University Lyon 1, Léon Bérard Centre, “Therapeutic Targeting of the Tumor and of its Immune Environment” team

[2] Institut Curie, Inserm U830, “Genetics and Biology of Paediatric Cancers” team

From pluripotency to totipotency

While it is already possible to obtain in vitro pluripotent cells (ie, cells capable of generating all tissues of an embryo) from any cell type, researchers from Maria-Elena Torres-Padilla’s team have pushed the limits of science even further. They managed to obtain totipotent cells with the same characteristics as those of the earliest embryonic stages and with even more interesting properties. Obtained in collaboration with Juanma Vaquerizas from the Max Planck Institute for Molecular Biomedicine (Münster, Germany), these results are published on 3rd of August in the journal Nature Structural & Molecular Biology.
Cellules Souches embryonnaires

Human embryonic stem cells have the potential to form in vitro neural tube -like structures of the embryo. ©Inserm/Benchoua Alexandra

Just after fertilization, when the embryo is comprised of only 1 or 2 cells, cells are “totipotent“, that is to say, capable of producing an entire embryo as well as the placenta and umbilical cord that accompany it. During the subsequent rounds of cell division, cells rapidly lose this plasticity and become “pluripotent”. At the blastocyst stage (about thirty cells), the so-called “embryonic stem cells” can differentiate into any tissue, although they alone cannot give birth to a foetus anymore. Pluripotent cells then continue to specialise and form the various tissues of the body through a process called cellular differentiation.

For some years, it has been possible to re-programme differentiated cells into pluripotent ones, but not into totipotent cells. Now, the team of Maria-Elena Torres-Padilla has studied the characteristics of totipotent cells of the embryo and found factors capable of inducing a totipotent-like state.

When culturing pluripotent stem cells in vitro, a small amount of totipotent cells appear spontaneously; these are called “2C-like cells” (named after their resemblance to the 2-cell stage embryo). The researchers compared these cells to those present in early embryos in order to find their common characteristics and those that make them different from pluripotent cells. In particular, the teams found that the DNA was less condensed in totipotent cells and that the amount of the protein complex CAF1 was diminished. A closer look revealed that CAF1 -already known for its role in the assembly of chromatin (the organised state of DNA)- is responsible for maintaining the pluripotent state by ensuring that the DNA is wrapped around histones.

Based on this hypothesis, the Torres-Padilla team were able to induce a totipotent state by inactivating the expression of the CAF1 complex, which led to chromatin reprogramming into a less condensed state.

These results provide new elements for the understanding of pluripotency and could increase the efficiency of reprogramming somatic cells to be used for applications in regenerative medicine.

Detailed structure of human ribosome revealed

A team at the Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC – CNRS/Université de Strasbourg/Inserm) has evidenced, at the atomic scale, the threedimensional structure of the complete human ribosome and the detailed interactions that occur within it. These findings, obtained using a technology that is unique in France, open the way to further exploring some of the adverse effects of antibiotics, and, in the longer term, to the treatment of diseases related to ribosomal dysfunctions and the deregulation of protein synthesis. This work is published in Nature on 22 April 2015.

Ribosomes are large complexes of proteins and RNA folded together, which — within the cells of all living beings — act as molecular nano-machines in the expression of genes and the biosynthesis of proteins. While the ribosomal structures of different species were already known in detail at the atomic scale, determining the particularly complex structure of the human ribosome remained a major challenge.

The team led by Bruno Klaholz at IGBMC (CNRS/Université de Strasbourg/Inserm) has now visualized the atomic structure of the complete human ribosome at a resolution greater than 3 angströms (0.3 nanometers). The model obtained represents the 220,000 atoms that make up the two subunits of the ribosome and makes it possible for the first time to explore its detailed arrangement as well as visualize and identify its different amino acids and nucleotides in 3D. The scientists focused in particular on the various binding sites and detailed interactions that occur within this structure. For example, their efforts revealed that after delivering the amino acids they are carrying, transfer RNA continue to interact with the ribosome at a specific site (the tRNA exit site). The team has also shed light on the dynamics of the two ribosomal subunits, which slightly rotate during the protein biosynthesis process, thus heavily remodeling the 3D configuration of the structure at their interface.

These results were achieved using a series of cutting-edge technologies. The samples were highly purified and then frozen before being visualized through cryo-electron microscopy. This method enables scientists to study fixed objects whose orientation does not change and whose structure and biological functions are preserved. A combination of image processing and 3D reconstruction applied to the images obtained by the latest-generation cryo-electron microscope operated by the IGBMC — which is unique in France — made it possible to achieve this rare degree of accuracy.

This detailed knowledge of the structure and dynamics of the complete human ribosome opens the way to further crucial explorations. It is now possible to envisage studying the adverse effects of certain antibiotics designed to fight bacterial ribosomes — and which may target the human ribosome “by mistake”. Listing existing binding sites is the first step towards enhancing the specificity of therapeutic compounds and preventing them from binding to the wrong site. In the longer term, these findings could also help develop treatments for diseases linked to ribosomal dysfunctions and the deregulation of protein synthesis. For example, in the case of cancers, being able to target the ribosomes of diseased cells would make it possible to reduce their protein synthesis rates.

Klaholz 

Example of the three-dimensional elements that could be distinguished within the atomic structure of the complete human ribosome (insert). The resolution (of about 1 angström) is able to determine whether or not there are any interactions between the different elements. © H. Khatter, A.G. Myasnikov, S. K. Natchiar & B.P. Klaholz

Towards a new weapon against muscular dystrophy

Research efforts associating scientists from the CNRS, UVSQ and INSERM within the Laboratoire END-ICAP[1], working in collaboration with a team from the University of Bern, has demonstrated the therapeutic potential of a new class of synthetic oligonucleotides[2] in the treatment of Duchenne muscular dystrophy (DMD) using RNA “surgery”. Tested in the mouse, this new generation of molecules proved to be clinically superior to those currently under evaluation in DMD patients, notably for restoring cardio-respiratory and central nervous system function. These findings were published on 2 February 2015 in Nature Medicine.

Etude de la myopathie de Duchenne

Study of Duchenne Muscular Dystrophy-  Necrotic lesions (cellular death) of muscular fibers made up of myofribils. Gomori trichrome stain. ©Inserm/Fardeau, Michel

Neuromuscular diseases include several hundred conditions, mainly of genetic origin, which are defined by a defect in muscle control or the destruction of muscle tissue. Taken together, they affect tens of thousands of people in France, and represent a major public health challenge. The most emblematic of these conditions, Duchenne Muscular Dystrophy (DMD) is caused by mutations that affect the gene coding for dystrophin, a protein essential for the correct functioning of muscle cells. This particularly severe and disabling disease does not yet benefit from any satisfactory treatment.

RNA “surgery” is an approach that has been developed in order to correct certain genetic abnormalities. This therapy is based on using small sequences of antisense oligonucleotides (AON)[3] that can bind to — and specifically act on — messenger RNA, and allow the synthesis of a missing protein. Several studies are underway to synthesize different types of AONs designed to act on dystrophin production. Despite the encouraging results of some clinical trials, existing AONs have limitations: their level of toxicity is sometimes high and they cannot act at the cardiac level or cross the blood-brain barrier. Designing a therapy that would be effective simultaneously for all skeletal muscles, the heart and the central nervous system, remains a challenge.

The authors of this work have developed new nucleotides for AON synthesis: tricyclo-DNA (tcDNA). These AON-tcDNA, synthetic analogs of DNA, hybridize with target RNA and cause the excision of a fragment of RNA[4]. By acting on that part of the gene that carries an error, they allow the synthesis of a truncated — but stable and functional — dystrophin. The monitoring of DMD mice treated with these AON-tcDNA has shown that these analogs perform better than their previous equivalents. Administered intravenously, the AON-tcDNA are efficiently distributed throughout the skeletal muscle, and also reach the cardiac tissue and central nervous system, which was not the case for their predecessors. In addition, the restoration of dystrophin production is more effective than with previous AONs. After a twelve-week treatment, the mice displayed highly significant improvements, not only in muscle function but also in cardio-respiratory function, which are the principal targets in patients suffering from this neuromuscular disease.

The scientists also demonstrated a correction of emotional responses, which are naturally exacerbated in DMD subjects and may cause learning disabilities and cognitive defects. This part of the study, performed in collaboration with a team from the Institut des Neurosciences Paris Saclay (CNRS/Université Paris-Sud), showed that dystrophin is crucial to the proper functioning of certain neurons and that the behavioral disorders observed in the context of a dystrophin deficit were at least partially reversible in adult mice with DMD.

As well as these promising results, AON-tcDNA are characterized by a lengthy residence time within tissues, which in the future will allow treatments to be administered at longer intervals. Another advantage is that they are not degraded but gradually excreted by the body, thus making the treatment reversible and limiting its toxicity. The toxicological analyses required are still ongoing but their initial results suggest that these new AONs are well tolerated at high doses in mice.

The mechanisms responsible for the efficacy of these third-generation AONs are still poorly understood but several of their properties may be involved, including notably their strong affinity for RNA and their ability to form “nanoparticle” aggregates in a spontaneous manner.

The chemistry of tcDNA thus opens numerous perspectives for their application in various genetic diseases. Above all, this is a new step towards a systemic drug therapy[5] for Duchenne muscular dystrophy.


Clinical trials in humans are scheduled within the next 18 to 24 months, in collaboration with the company, Synthena.

This work was carried out as part of a large international collaborative project (ICE – International Collaborative Effort for DMD) at the initiative of the Monaco Association Against Muscular Dystrophy (AMM) and the Duchenne Parent Project France (DPP-F), and received partial support from the HandiMedEx Chair of Excellence under the French Investments for the Future (Investissements d’Avenir) program.

[1] Laboratoire END-ICAP: Handicap neuromusculaire: physiopathologie, biotechnologies et pharmacologies appliquées (UVSQ/Inserm) forms an integral part of the International Associated Laboratory for “Biotherapies Applied to Neuromuscular Disabilities” (LIA BAHN – UVSQ/CSM).

[2] Oligonucleotides are short segments of nucleic acids (RNA or DNA).

[3] These sequences are called antisense because they complement messenger RNA. The synthetic strand will thus have a sequence that is the reverse of that of the RNA strand.

[4]  After the transcription of DNA into RNA, the latter undergo a number of changes, including splicing, during which non-coding fragments will be excluded in order to produce mature RNA used for translation into proteins.

[5] Administered systemically.

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